J4_5NG8_007

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUGC*GCG*CCUAAGGUAGC*GCACGAAAG

Length

27 nucleotides

Bulged bases

5NG8|1|AA|A|1998

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|AA|C|1860
5NG8|1|AA|U|1861
5NG8|1|AA|G|1862
5NG8|1|AA|C|1863
*
5NG8|1|AA|G|1931
5NG8|1|AA|C|1932
5NG8|1|AA|G|1933
*
5NG8|1|AA|C|1951
5NG8|1|AA|C|1952
5NG8|1|AA|U|1953
5NG8|1|AA|A|1954
5NG8|1|AA|A|1955
5NG8|1|AA|G|1956
5NG8|1|AA|G|1957
5NG8|1|AA|U|1958
5NG8|1|AA|A|1959
5NG8|1|AA|G|1960
5NG8|1|AA|C|1961
*
5NG8|1|AA|G|1991
5NG8|1|AA|C|1992
5NG8|1|AA|A|1993
5NG8|1|AA|C|1994
5NG8|1|AA|G|1995
5NG8|1|AA|A|1996
5NG8|1|AA|A|1997
5NG8|1|AA|A|1998
5NG8|1|AA|G|1999

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2

Chain Aa

Small subunit ribosomal RNA; SSU rRNA