J4_5NG8_008

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CAAAGG*CUUGAC*GGG*CGG

Length

18 nucleotides

Bulged bases

5NG8|1|AA|G|2409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|AA|C|2312
5NG8|1|AA|A|2313
5NG8|1|AA|A|2314
5NG8|1|AA|A|2315
5NG8|1|AA|G|2316
5NG8|1|AA|G|2317
*
5NG8|1|AA|C|2369
5NG8|1|AA|U|2370
5NG8|1|AA|U|2371
5NG8|1|AA|G|2372
5NG8|1|AA|A|2373
5NG8|1|AA|C|2374
*
5NG8|1|AA|G|2397
5NG8|1|AA|G|2398
5NG8|1|AA|G|2399
*
5NG8|1|AA|C|2408
5NG8|1|AA|G|2409
5NG8|1|AA|G|2410

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L33

Chain A3

50S ribosomal protein L35

Chain AU

50S ribosomal protein L27