J4_5NG8_010

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GAGUAACAC*GCU*AUAG*CC

Length

18 nucleotides

Bulged bases

5NG8|1|Aa|C|120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|Aa|G|114
5NG8|1|Aa|A|115
5NG8|1|Aa|G|116
5NG8|1|Aa|U|117
5NG8|1|Aa|A|118
5NG8|1|Aa|A|119
5NG8|1|Aa|C|120
5NG8|1|Aa|A|121
5NG8|1|Aa|C|122
*
5NG8|1|Aa|G|246
5NG8|1|Aa|C|247
5NG8|1|Aa|U|248
*
5NG8|1|Aa|A|294
5NG8|1|Aa|U|295
5NG8|1|Aa|A|296
5NG8|1|Aa|G|297
*
5NG8|1|Aa|C|319
5NG8|1|Aa|C|320

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Al

30S ribosomal protein S12

Chain Ap

30S ribosomal protein S16

Chain Aq

30S ribosomal protein S17