J4_5NG8_014

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CAAG*CGUAG*CGAG*CGUUUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|BA|C|644
5NG8|1|BA|A|645
5NG8|1|BA|A|646
5NG8|1|BA|G|647
*
5NG8|1|BA|C|669
5NG8|1|BA|G|670
5NG8|1|BA|U|671
5NG8|1|BA|A|672
5NG8|1|BA|G|673
*
5NG8|1|BA|C|680
5NG8|1|BA|G|681
5NG8|1|BA|A|682
5NG8|1|BA|G|683
*
5NG8|1|BA|C|695
5NG8|1|BA|G|696
5NG8|1|BA|U|697
5NG8|1|BA|U|698
5NG8|1|BA|U|699
5NG8|1|BA|A|700
5NG8|1|BA|G|701

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BJ

50S ribosomal protein L15