J4_5NG8_020

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|BA|G|2670
5NG8|1|BA|A|2671
5NG8|1|BA|G|2672
5NG8|1|BA|C|2673
*
5NG8|1|BA|G|2701
5NG8|1|BA|A|2702
5NG8|1|BA|C|2703
*
5NG8|1|BA|G|2758
5NG8|1|BA|G|2759
5NG8|1|BA|A|2760
5NG8|1|BA|C|2761
5NG8|1|BA|G|2762
*
5NG8|1|BA|C|2796
5NG8|1|BA|C|2797
5NG8|1|BA|C|2798

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BH

50S ribosomal protein L13

Chain BI

50S ribosomal protein L14