J4_5NO2_003
3D structure
- PDB id
- 5NO2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.16 Å
Loop
- Sequence
- CGUAAAGCG*CGAAAGC*GCCGUAAACGAUG*CCG
- Length
- 32 nucleotides
- Bulged bases
- 5NO2|1|A|A|572, 5NO2|1|A|C|576, 5NO2|1|A|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NO2|1|A|C|569
5NO2|1|A|G|570
5NO2|1|A|U|571
5NO2|1|A|A|572
5NO2|1|A|A|573
5NO2|1|A|A|574
5NO2|1|A|G|575
5NO2|1|A|C|576
5NO2|1|A|G|577
*
5NO2|1|A|C|764
5NO2|1|A|G|765
5NO2|1|A|A|766
5NO2|1|A|A|767
5NO2|1|A|A|768
5NO2|1|A|G|769
5NO2|1|A|C|770
*
5NO2|1|A|G|809
5NO2|1|A|C|810
5NO2|1|A|C|811
5NO2|1|A|G|812
5NO2|1|A|U|813
5NO2|1|A|A|814
5NO2|1|A|A|815
5NO2|1|A|A|816
5NO2|1|A|C|817
5NO2|1|A|G|818
5NO2|1|A|A|819
5NO2|1|A|U|820
5NO2|1|A|G|821
*
5NO2|1|A|C|879
5NO2|1|A|C|880
5NO2|1|A|G|881
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
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