J4_5NWY_006

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NWY_006 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0548

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5NWY|1|N|G|297
5NWY|1|N|G|298
5NWY|1|N|A|299
5NWY|1|N|A|300
5NWY|1|N|G|301
*
5NWY|1|N|C|316
5NWY|1|N|G|317
5NWY|1|N|C|318
5NWY|1|N|G|319
*
5NWY|1|N|C|323
5NWY|1|N|A|324
5NWY|1|N|G|325
*
5NWY|1|N|C|337
5NWY|1|N|G|338
5NWY|1|N|U|339
5NWY|1|N|A|340
5NWY|1|N|C|341

Current chains

Chain N

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L4

Chain h

50S ribosomal protein L24