J4_5NWY_009

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5NWY|1|N|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NWY_009 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0667

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5NWY|1|N|G|1310
5NWY|1|N|G|1311
5NWY|1|N|U|1312
5NWY|1|N|U|1313
5NWY|1|N|C|1314
*
5NWY|1|N|G|1338
5NWY|1|N|G|1339
5NWY|1|N|U|1340
5NWY|1|N|G|1341
5NWY|1|N|A|1342
5NWY|1|N|G|1343
*
5NWY|1|N|C|1404
5NWY|1|N|U|1405
*
5NWY|1|N|A|1597
5NWY|1|N|A|1598
5NWY|1|N|U|1599
5NWY|1|N|C|1600
5NWY|1|N|G|1601
5NWY|1|N|U|1602
5NWY|1|N|A|1603
5NWY|1|N|C|1604

Current chains

Chain N

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L23

Chain p

50S ribosomal protein L34