J4_5O2R_002
3D structure
- PDB id
- 5O2R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 5O2R|1|A|A|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5O2R_002 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.1545
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5O2R|1|A|C|601
5O2R|1|A|A|602
5O2R|1|A|A|603
5O2R|1|A|G|604
*
5O2R|1|A|C|624
5O2R|1|A|G|625
5O2R|1|A|A|626
5O2R|1|A|A|627
5O2R|1|A|G|628
*
5O2R|1|A|C|635
5O2R|1|A|G|636
5O2R|1|A|A|637
5O2R|1|A|G|638
*
5O2R|1|A|C|650
5O2R|1|A|G|651
5O2R|1|A|U|652
5O2R|1|A|U|653
5O2R|1|A|A|654
5O2R|1|A|A|655
5O2R|1|A|G|656
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
Coloring options: