J4_5O5J_001

3D structure

PDB id

5O5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

5O5J|1|A|C|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O5J|1|A|G|111
5O5J|1|A|A|112
5O5J|1|A|G|113
5O5J|1|A|U|114
5O5J|1|A|A|115
5O5J|1|A|A|116
5O5J|1|A|C|117
5O5J|1|A|A|118
5O5J|1|A|C|119
*
5O5J|1|A|G|238
5O5J|1|A|G|239
5O5J|1|A|C|240
*
5O5J|1|A|G|286
5O5J|1|A|U|287
5O5J|1|A|A|288
5O5J|1|A|G|289
*
5O5J|1|A|C|311
5O5J|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17