J4_5OA3_001
3D structure
- PDB id
- 5OA3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 40S-eIF2D-re-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUGG*CGC*GAUGUCC*GC
- Length
- 16 nucleotides
- Bulged bases
- 5OA3|1|1|U|8, 5OA3|1|1|U|47, 5OA3|1|1|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5OA3_001 not in the Motif Atlas
- Homologous match to J4_7EQJ_002
- Geometric discrepancy: 0.3344
- The information below is about J4_7EQJ_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
5OA3|1|1|G|7
5OA3|1|1|U|8
5OA3|1|1|G|9
5OA3|1|1|G|10
*
5OA3|1|1|C|25
5OA3|1|1|G|26
5OA3|1|1|C|27
*
5OA3|1|1|G|43
5OA3|1|1|A|44
5OA3|1|1|U|45
5OA3|1|1|G|46
5OA3|1|1|U|47
5OA3|1|1|C|48
5OA3|1|1|C|49
*
5OA3|1|1|G|65
5OA3|1|1|C|66
Current chains
- Chain 1
- initiator Met-tRNA-i
Nearby chains
- Chain 0
- Eukaryotic translation initiation factor 2D
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: