J4_5ON6_020

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ON6_020 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.0984

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

5ON6|1|AR|C|2192
5ON6|1|AR|U|2193
5ON6|1|AR|G|2194
*
5ON6|1|AR|C|2248
5ON6|1|AR|G|2249
*
5ON6|1|AR|C|2267
5ON6|1|AR|U|2268
5ON6|1|AR|U|2269
5ON6|1|AR|A|2270
5ON6|1|AR|A|2271
5ON6|1|AR|G|2272
5ON6|1|AR|G|2273
5ON6|1|AR|U|2274
5ON6|1|AR|A|2275
5ON6|1|AR|G|2276
*
5ON6|1|AR|U|2310
5ON6|1|AR|G|2311
5ON6|1|AR|A|2312
5ON6|1|AR|A|2313
5ON6|1|AR|U|2314
5ON6|1|AR|G|2315

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain 6

Small subunit ribosomal RNA; SSU rRNA

Chain CD

60S ribosomal protein L2-A

Chain DP

60S ribosomal protein L41-B