J4_5OOL_004

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

5OOL|1|A|U|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5OOL_004 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1502

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5OOL|1|A|C|2544
5OOL|1|A|U|2545
5OOL|1|A|G|2546
*
5OOL|1|A|C|2569
5OOL|1|A|C|2570
*
5OOL|1|A|G|2587
5OOL|1|A|C|2588
5OOL|1|A|A|2589
5OOL|1|A|A|2590
5OOL|1|A|A|2591
5OOL|1|A|G|2592
5OOL|1|A|G|2593
5OOL|1|A|U|2594
5OOL|1|A|A|2595
5OOL|1|A|G|2596
*
5OOL|1|A|U|2630
5OOL|1|A|G|2631
5OOL|1|A|A|2632
5OOL|1|A|A|2633
5OOL|1|A|U|2634
5OOL|1|A|G|2635

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial