J4_5OPT_002
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUUAAAGGG*CCAAAG*CUGCAAACGAUG*CUC
- Length
- 30 nucleotides
- Bulged bases
- 5OPT|1|E|A|673, 5OPT|1|E|C|1359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5OPT|1|E|G|670
5OPT|1|E|U|671
5OPT|1|E|U|672
5OPT|1|E|A|673
5OPT|1|E|A|674
5OPT|1|E|A|675
5OPT|1|E|G|676
5OPT|1|E|G|677
5OPT|1|E|G|678
*
5OPT|1|E|C|1310
5OPT|1|E|C|1311
5OPT|1|E|A|1312
5OPT|1|E|A|1313
5OPT|1|E|A|1314
5OPT|1|E|G|1315
*
5OPT|1|E|C|1356
5OPT|1|E|U|1357
5OPT|1|E|G|1358
5OPT|1|E|C|1359
5OPT|1|E|A|1360
5OPT|1|E|A|1361
5OPT|1|E|A|1362
5OPT|1|E|C|1363
5OPT|1|E|G|1364
5OPT|1|E|A|1365
5OPT|1|E|U|1366
5OPT|1|E|G|1367
*
5OPT|1|E|C|1571
5OPT|1|E|U|1572
5OPT|1|E|C|1573
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain M
- 40S ribosomal protein S23, putative
- Chain R
- 40S ribosomal protein S13, putative
- Chain T
- 40S ribosomal protein S26
- Chain X
- 40S ribosomal protein S11, putative
- Chain d
- 40S ribosomal protein S2, putative
- Chain e
- 40S ribosomal protein S15a, putative
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