J4_5OPT_003
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGGAGCG*CUACAAUGUCAGUGAGAACAAGAAAAACGACUCUUGUCGGACC*GGAAAACCCCGGAAUCACGUAGACCCACUUG*CGAGGAA
- Length
- 88 nucleotides
- Bulged bases
- 5OPT|1|E|U|1990, 5OPT|1|E|U|1994, 5OPT|1|E|A|2002, 5OPT|1|E|G|2010, 5OPT|1|E|U|2016, 5OPT|1|E|A|2047, 5OPT|1|E|A|2048, 5OPT|1|E|C|2050, 5OPT|1|E|C|2051, 5OPT|1|E|G|2054, 5OPT|1|E|A|2055, 5OPT|1|E|G|2061, 5OPT|1|E|U|2062, 5OPT|1|E|A|2063, 5OPT|1|E|U|2072
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5OPT|1|E|U|1636
5OPT|1|E|G|1637
5OPT|1|E|G|1638
5OPT|1|E|A|1639
5OPT|1|E|G|1640
5OPT|1|E|C|1641
5OPT|1|E|G|1642
*
5OPT|1|E|C|1982
5OPT|1|E|U|1983
5OPT|1|E|A|1984
5OPT|1|E|C|1985
5OPT|1|E|A|1986
5OPT|1|E|A|1987
5OPT|1|E|U|1988
5OPT|1|E|G|1989
5OPT|1|E|U|1990
5OPT|1|E|C|1991
5OPT|1|E|A|1992
5OPT|1|E|G|1993
5OPT|1|E|U|1994
5OPT|1|E|G|1995
5OPT|1|E|A|1996
5OPT|1|E|G|1997
5OPT|1|E|A|1998
5OPT|1|E|A|1999
5OPT|1|E|C|2000
5OPT|1|E|A|2001
5OPT|1|E|A|2002
5OPT|1|E|G|2003
5OPT|1|E|A|2004
5OPT|1|E|A|2005
5OPT|1|E|A|2006
5OPT|1|E|A|2007
5OPT|1|E|A|2008
5OPT|1|E|C|2009
5OPT|1|E|G|2010
5OPT|1|E|A|2011
5OPT|1|E|C|2012
5OPT|1|E|U|2013
5OPT|1|E|C|2014
5OPT|1|E|U|2015
5OPT|1|E|U|2016
5OPT|1|E|G|2017
5OPT|1|E|U|2018
5OPT|1|E|C|2019
5OPT|1|E|G|2020
5OPT|1|E|G|2021
5OPT|1|E|A|2022
5OPT|1|E|C|2023
5OPT|1|E|C|2024
*
5OPT|1|E|G|2043
5OPT|1|E|G|2044
5OPT|1|E|A|2045
5OPT|1|E|A|2046
5OPT|1|E|A|2047
5OPT|1|E|A|2048
5OPT|1|E|C|2049
5OPT|1|E|C|2050
5OPT|1|E|C|2051
5OPT|1|E|C|2052
5OPT|1|E|G|2053
5OPT|1|E|G|2054
5OPT|1|E|A|2055
5OPT|1|E|A|2056
5OPT|1|E|U|2057
5OPT|1|E|C|2058
5OPT|1|E|A|2059
5OPT|1|E|C|2060
5OPT|1|E|G|2061
5OPT|1|E|U|2062
5OPT|1|E|A|2063
5OPT|1|E|G|2064
5OPT|1|E|A|2065
5OPT|1|E|C|2066
5OPT|1|E|C|2067
5OPT|1|E|C|2068
5OPT|1|E|A|2069
5OPT|1|E|C|2070
5OPT|1|E|U|2071
5OPT|1|E|U|2072
5OPT|1|E|G|2073
*
5OPT|1|E|C|2105
5OPT|1|E|G|2106
5OPT|1|E|A|2107
5OPT|1|E|G|2108
5OPT|1|E|G|2109
5OPT|1|E|A|2110
5OPT|1|E|A|2111
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain O
- 40S ribosomal protein S5, putative
- Chain a
- Ribosomal protein S25, putative
- Chain l
- Ribosomal protein S20, putative
- Chain m
- 40S ribosomal protein S3, putative
- Chain n
- 40S ribosomal protein S10, putative
- Chain o
- Ribosomal protein S19, putative
- Chain q
- Ribosomal protein S29, putative
- Chain r
- 40S ribosomal protein S16, putative
- Chain u
- 40S ribosomal protein S18, putative
Coloring options: