J4_5T6R_008
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 5T6R|1|A|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5T6R_008 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.1224
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T6R|1|A|C|2654
5T6R|1|A|U|2655
5T6R|1|A|A|2656
5T6R|1|A|A|2657
5T6R|1|A|G|2658
*
5T6R|1|A|U|2712
5T6R|1|A|U|2713
5T6R|1|A|G|2714
5T6R|1|A|A|2715
5T6R|1|A|U|2716
*
5T6R|1|A|A|2740
5T6R|1|A|C|2741
5T6R|1|A|C|2742
*
5T6R|1|A|G|2751
5T6R|1|A|U|2752
5T6R|1|A|G|2753
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain G
- 60S ribosomal protein L5
- Chain Q
- 60S ribosomal protein L42-A
- Chain g
- 60S ribosomal protein L21-A
- Chain o
- 60S ribosomal protein L29
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