J4_5T7V_011

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGUAACAC*GCUGCAUUAG*CAACGAUGCAUAG*CC

Length

34 nucleotides

Bulged bases

5T7V|1|A|C|120, 5T7V|1|A|U|252, 5T7V|1|A|C|288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T7V|1|A|G|114
5T7V|1|A|A|115
5T7V|1|A|G|116
5T7V|1|A|U|117
5T7V|1|A|A|118
5T7V|1|A|A|119
5T7V|1|A|C|120
5T7V|1|A|A|121
5T7V|1|A|C|122
*
5T7V|1|A|G|246
5T7V|1|A|C|247
5T7V|1|A|U|248
5T7V|1|A|G|249
5T7V|1|A|C|250
5T7V|1|A|A|251
5T7V|1|A|U|252
5T7V|1|A|U|253
5T7V|1|A|A|254
5T7V|1|A|G|255
*
5T7V|1|A|C|285
5T7V|1|A|A|286
5T7V|1|A|A|287
5T7V|1|A|C|288
5T7V|1|A|G|289
5T7V|1|A|A|290
5T7V|1|A|U|291
5T7V|1|A|G|292
5T7V|1|A|C|293
5T7V|1|A|A|294
5T7V|1|A|U|295
5T7V|1|A|A|296
5T7V|1|A|G|297
*
5T7V|1|A|C|319
5T7V|1|A|C|320

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain S3

30S ribosomal protein S12

Chain S7

30S ribosomal protein S16

Chain S8

30S ribosomal protein S17