J4_5T7V_014

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAAG*CC*GAGC*GG

Length

14 nucleotides

Bulged bases

5T7V|1|B|G|1309, 5T7V|1|B|A|1310, 5T7V|1|B|A|1312, 5T7V|1|B|G|1691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5T7V_014 not in the Motif Atlas

Homologous match to J4_4WF9_004

Geometric discrepancy: 0.1245

The information below is about J4_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5T7V|1|B|C|1308
5T7V|1|B|G|1309
5T7V|1|B|A|1310
5T7V|1|B|A|1311
5T7V|1|B|A|1312
5T7V|1|B|G|1313
*
5T7V|1|B|C|1331
5T7V|1|B|C|1332
*
5T7V|1|B|G|1689
5T7V|1|B|A|1690
5T7V|1|B|G|1691
5T7V|1|B|C|1692
*
5T7V|1|B|G|2036
5T7V|1|B|G|2037

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L22

Chain LE

50S ribosomal protein L32

Chain LQ

50S ribosomal protein L17