J4_5TBW_001

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UC*GAGUCG*CUAAGUG*UAAA

Length

19 nucleotides

Bulged bases

5TBW|1|1|U|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.4

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

5TBW|1|1|U|112
5TBW|1|1|C|113
*
5TBW|1|1|G|267
5TBW|1|1|A|268
5TBW|1|1|G|269
5TBW|1|1|U|270
5TBW|1|1|C|271
5TBW|1|1|G|272
*
5TBW|1|1|C|293
5TBW|1|1|U|294
5TBW|1|1|A|295
5TBW|1|1|A|296
5TBW|1|1|G|297
5TBW|1|1|U|298
5TBW|1|1|G|299
*
5TBW|1|1|U|316
5TBW|1|1|A|317
5TBW|1|1|A|318
5TBW|1|1|A|319

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L35-A

Chain AJ

60S ribosomal protein L36-A

Chain t

60S ribosomal protein L13-A

Chain v

60S ribosomal protein L15-A