J4_5TBW_003

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

5TBW|1|1|A|1452, 5TBW|1|1|U|1455, 5TBW|1|1|A|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69568.1

Basepair signature

cWW-F-cWW-F-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

5TBW|1|1|C|1451
5TBW|1|1|A|1452
5TBW|1|1|A|1453
5TBW|1|1|A|1454
5TBW|1|1|U|1455
5TBW|1|1|A|1456
5TBW|1|1|U|1457
*
5TBW|1|1|A|1475
5TBW|1|1|G|1476
*
5TBW|1|1|U|1877
5TBW|1|1|G|1878
5TBW|1|1|A|1879
5TBW|1|1|U|1880
*
5TBW|1|1|A|2352
5TBW|1|1|G|2353

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L31-A

Chain x

60S ribosomal protein L17-A

Chain z

60S ribosomal protein L19-A