J4_5TBW_018

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5TBW_018 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.096

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5TBW|1|AR|C|2192
5TBW|1|AR|U|2193
5TBW|1|AR|G|2194
*
5TBW|1|AR|C|2248
5TBW|1|AR|G|2249
*
5TBW|1|AR|C|2267
5TBW|1|AR|U|2268
5TBW|1|AR|U|2269
5TBW|1|AR|A|2270
5TBW|1|AR|A|2271
5TBW|1|AR|G|2272
5TBW|1|AR|G|2273
5TBW|1|AR|U|2274
5TBW|1|AR|A|2275
5TBW|1|AR|G|2276
*
5TBW|1|AR|U|2310
5TBW|1|AR|G|2311
5TBW|1|AR|A|2312
5TBW|1|AR|A|2313
5TBW|1|AR|U|2314
5TBW|1|AR|G|2315

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain DP

60S ribosomal protein L41-A

Chain sR

Small subunit ribosomal RNA; SSU rRNA