J4_5TGA_016

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GG*CUUAAC*GGAAGAG*UC

Length

17 nucleotides

Bulged bases

5TGA|1|5|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGA|1|5|G|1674
5TGA|1|5|G|1675
*
5TGA|1|5|C|1693
5TGA|1|5|U|1694
5TGA|1|5|U|1695
5TGA|1|5|A|1696
5TGA|1|5|A|1697
5TGA|1|5|C|1698
*
5TGA|1|5|G|1747
5TGA|1|5|G|1748
5TGA|1|5|A|1749
5TGA|1|5|A|1750
5TGA|1|5|G|1751
5TGA|1|5|A|1752
5TGA|1|5|G|1753
*
5TGA|1|5|U|1772
5TGA|1|5|C|1773

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain n2

60S ribosomal protein L22-A

Chain o4

60S ribosomal protein L34-A

Chain o8

60S ribosomal protein L38