J4_5U9F_008

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5U9F|1|01|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5U9F_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1073

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5U9F|1|01|C|1833
5U9F|1|01|U|1834
5U9F|1|01|G|1835
*
5U9F|1|01|C|1905
5U9F|1|01|G|1906
*
5U9F|1|01|C|1924
5U9F|1|01|C|1925
5U9F|1|01|U|1926
5U9F|1|01|A|1927
5U9F|1|01|A|1928
5U9F|1|01|G|1929
5U9F|1|01|G|1930
5U9F|1|01|U|1931
5U9F|1|01|A|1932
5U9F|1|01|G|1933
*
5U9F|1|01|C|1967
5U9F|1|01|G|1968
5U9F|1|01|A|1969
5U9F|1|01|A|1970
5U9F|1|01|U|1971
5U9F|1|01|G|1972

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain W

Transfer RNA; tRNA