J4_5U9F_012

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CAUAACG*CCAAAGA*UUGC

Length

21 nucleotides

Bulged bases

5U9F|1|A|C|183, 5U9F|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5U9F|1|A|G|142
5U9F|1|A|A|143
5U9F|1|A|G|144
*
5U9F|1|A|C|178
5U9F|1|A|A|179
5U9F|1|A|U|180
5U9F|1|A|A|181
5U9F|1|A|A|182
5U9F|1|A|C|183
5U9F|1|A|G|184
*
5U9F|1|A|C|193
5U9F|1|A|C|194
5U9F|1|A|A|195
5U9F|1|A|A|196
5U9F|1|A|A|197
5U9F|1|A|G|198
5U9F|1|A|A|199
*
5U9F|1|A|U|218
5U9F|1|A|U|219
5U9F|1|A|G|220
5U9F|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20