3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
5U9F|1|A|C|576, 5U9F|1|A|A|815, 5U9F|1|A|C|817, 5U9F|1|A|A|819
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5U9F_013 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.0917
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

5U9F|1|A|G|575
5U9F|1|A|C|576
5U9F|1|A|G|577
*
5U9F|1|A|C|764
5U9F|1|A|G|765
5U9F|1|A|A|766
5U9F|1|A|A|767
5U9F|1|A|A|768
5U9F|1|A|G|769
*
5U9F|1|A|C|810
5U9F|1|A|C|811
5U9F|1|A|G|812
5U9F|1|A|U|813
5U9F|1|A|A|814
5U9F|1|A|A|815
5U9F|1|A|A|816
5U9F|1|A|C|817
5U9F|1|A|G|818
5U9F|1|A|A|819
5U9F|1|A|U|820
5U9F|1|A|G|821
*
5U9F|1|A|C|879
5U9F|1|A|C|880

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain 01
Large subunit ribosomal RNA; LSU rRNA
Chain H
30S ribosomal protein S8
Chain L
30S ribosomal protein S12
Chain O
30S ribosomal protein S15
Chain Q
30S ribosomal protein S17
Chain U
30S ribosomal protein S21

Coloring options:


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