J4_5U9F_014
3D structure
- PDB id
- 5U9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 5U9F|1|W|U|8, 5U9F|1|W|U|47, 5U9F|1|W|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5U9F_014 not in the Motif Atlas
- Homologous match to J4_5E81_027
- Geometric discrepancy: 0.1731
- The information below is about J4_5E81_027
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5U9F|1|W|G|7
5U9F|1|W|U|8
5U9F|1|W|G|9
5U9F|1|W|G|10
*
5U9F|1|W|C|25
5U9F|1|W|G|26
5U9F|1|W|U|27
*
5U9F|1|W|A|43
5U9F|1|W|A|44
5U9F|1|W|G|45
5U9F|1|W|G|46
5U9F|1|W|U|47
5U9F|1|W|C|48
5U9F|1|W|G|49
*
5U9F|1|W|C|65
5U9F|1|W|C|66
Current chains
- Chain W
- fMet-tRNA (P- and E-site)
Nearby chains
- Chain 01
- Large subunit ribosomal RNA; LSU rRNA
- Chain 15
- 50S ribosomal protein L16
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- 30S ribosomal protein S13
- Chain Z
- Peptide chain release factor RF2
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