J4_5UQ7_002

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UQ7_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.101

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

5UQ7|1|A|C|297
5UQ7|1|A|G|298
5UQ7|1|A|A|299
5UQ7|1|A|A|300
5UQ7|1|A|G|301
*
5UQ7|1|A|C|316
5UQ7|1|A|G|317
5UQ7|1|A|C|318
5UQ7|1|A|C|319
*
5UQ7|1|A|G|323
5UQ7|1|A|A|324
5UQ7|1|A|G|325
*
5UQ7|1|A|C|337
5UQ7|1|A|G|338
5UQ7|1|A|U|339
5UQ7|1|A|A|340
5UQ7|1|A|G|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain Y

50S ribosomal protein L24