J4_5UYK_004

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5UYK|1|01|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UYK_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1122

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5UYK|1|01|G|1310
5UYK|1|01|G|1311
5UYK|1|01|U|1312
5UYK|1|01|U|1313
5UYK|1|01|C|1314
*
5UYK|1|01|G|1338
5UYK|1|01|G|1339
5UYK|1|01|U|1340
5UYK|1|01|G|1341
5UYK|1|01|A|1342
5UYK|1|01|G|1343
*
5UYK|1|01|C|1404
5UYK|1|01|U|1405
*
5UYK|1|01|A|1597
5UYK|1|01|A|1598
5UYK|1|01|U|1599
5UYK|1|01|C|1600
5UYK|1|01|G|1601
5UYK|1|01|U|1602
5UYK|1|01|A|1603
5UYK|1|01|C|1604

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L23

Chain 32

50S ribosomal protein L34