J4_5UYK_015
3D structure
- PDB id
- 5UYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 5UYK|1|X|U|8, 5UYK|1|X|U|47, 5UYK|1|X|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5UYK_015 not in the Motif Atlas
- Homologous match to J4_3AMU_002
- Geometric discrepancy: 0.2764
- The information below is about J4_3AMU_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5UYK|1|X|G|7
5UYK|1|X|U|8
5UYK|1|X|G|9
5UYK|1|X|G|10
*
5UYK|1|X|C|25
5UYK|1|X|G|26
5UYK|1|X|U|27
*
5UYK|1|X|A|43
5UYK|1|X|A|44
5UYK|1|X|G|45
5UYK|1|X|G|46
5UYK|1|X|U|47
5UYK|1|X|C|48
5UYK|1|X|G|49
*
5UYK|1|X|C|65
5UYK|1|X|C|66
Current chains
- Chain X
- tRNAfMet
Nearby chains
- Chain 31
- 50S ribosomal protein L33
- Chain G
- 30S ribosomal protein S7
Coloring options: