J4_5UYL_004

3D structure

PDB id

5UYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5UYL|1|01|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UYL_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1039

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5UYL|1|01|G|1310
5UYL|1|01|G|1311
5UYL|1|01|U|1312
5UYL|1|01|U|1313
5UYL|1|01|C|1314
*
5UYL|1|01|G|1338
5UYL|1|01|G|1339
5UYL|1|01|U|1340
5UYL|1|01|G|1341
5UYL|1|01|A|1342
5UYL|1|01|G|1343
*
5UYL|1|01|C|1404
5UYL|1|01|U|1405
*
5UYL|1|01|A|1597
5UYL|1|01|A|1598
5UYL|1|01|U|1599
5UYL|1|01|C|1600
5UYL|1|01|G|1601
5UYL|1|01|U|1602
5UYL|1|01|A|1603
5UYL|1|01|C|1604

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L23

Chain 32

50S ribosomal protein L34