3D structure

PDB id
5UYM (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUG*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
5UYM|1|01|U|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5UYM_008 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.0923
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

5UYM|1|01|C|1833
5UYM|1|01|U|1834
5UYM|1|01|G|1835
*
5UYM|1|01|C|1905
5UYM|1|01|G|1906
*
5UYM|1|01|C|1924
5UYM|1|01|C|1925
5UYM|1|01|U|1926
5UYM|1|01|A|1927
5UYM|1|01|A|1928
5UYM|1|01|G|1929
5UYM|1|01|G|1930
5UYM|1|01|U|1931
5UYM|1|01|A|1932
5UYM|1|01|G|1933
*
5UYM|1|01|C|1967
5UYM|1|01|G|1968
5UYM|1|01|A|1969
5UYM|1|01|A|1970
5UYM|1|01|U|1971
5UYM|1|01|G|1972

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 04
50S ribosomal protein L2
Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain W
Transfer RNA; tRNA

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