J4_5UYP_002
3D structure
- PDB id
- 5UYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 5UYP|1|01|A|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5UYP_002 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.1814
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5UYP|1|01|C|601
5UYP|1|01|A|602
5UYP|1|01|A|603
5UYP|1|01|G|604
*
5UYP|1|01|C|624
5UYP|1|01|G|625
5UYP|1|01|A|626
5UYP|1|01|A|627
5UYP|1|01|G|628
*
5UYP|1|01|C|635
5UYP|1|01|G|636
5UYP|1|01|A|637
5UYP|1|01|G|638
*
5UYP|1|01|C|650
5UYP|1|01|G|651
5UYP|1|01|U|652
5UYP|1|01|U|653
5UYP|1|01|A|654
5UYP|1|01|A|655
5UYP|1|01|G|656
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 06
- 50S ribosomal protein L4
- Chain 14
- 50S ribosomal protein L15
- Chain 33
- 50S ribosomal protein L35
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