J4_5UYP_004

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5UYP|1|01|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UYP_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1216

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5UYP|1|01|G|1310
5UYP|1|01|G|1311
5UYP|1|01|U|1312
5UYP|1|01|U|1313
5UYP|1|01|C|1314
*
5UYP|1|01|G|1338
5UYP|1|01|G|1339
5UYP|1|01|U|1340
5UYP|1|01|G|1341
5UYP|1|01|A|1342
5UYP|1|01|G|1343
*
5UYP|1|01|C|1404
5UYP|1|01|U|1405
*
5UYP|1|01|A|1597
5UYP|1|01|A|1598
5UYP|1|01|U|1599
5UYP|1|01|C|1600
5UYP|1|01|G|1601
5UYP|1|01|U|1602
5UYP|1|01|A|1603
5UYP|1|01|C|1604

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L23

Chain 32

50S ribosomal protein L34