J4_5UYP_008
3D structure
- PDB id
- 5UYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 5UYP|1|01|U|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5UYP_008 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1238
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
5UYP|1|01|C|1833
5UYP|1|01|U|1834
5UYP|1|01|G|1835
*
5UYP|1|01|C|1905
5UYP|1|01|G|1906
*
5UYP|1|01|C|1924
5UYP|1|01|C|1925
5UYP|1|01|U|1926
5UYP|1|01|A|1927
5UYP|1|01|A|1928
5UYP|1|01|G|1929
5UYP|1|01|G|1930
5UYP|1|01|U|1931
5UYP|1|01|A|1932
5UYP|1|01|G|1933
*
5UYP|1|01|C|1967
5UYP|1|01|G|1968
5UYP|1|01|A|1969
5UYP|1|01|A|1970
5UYP|1|01|U|1971
5UYP|1|01|G|1972
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 04
- 50S ribosomal protein L2
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain W
- Transfer RNA; tRNA
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