J4_5UYQ_004

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5UYQ|1|01|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UYQ_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1079

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5UYQ|1|01|G|1310
5UYQ|1|01|G|1311
5UYQ|1|01|U|1312
5UYQ|1|01|U|1313
5UYQ|1|01|C|1314
*
5UYQ|1|01|G|1338
5UYQ|1|01|G|1339
5UYQ|1|01|U|1340
5UYQ|1|01|G|1341
5UYQ|1|01|A|1342
5UYQ|1|01|G|1343
*
5UYQ|1|01|C|1404
5UYQ|1|01|U|1405
*
5UYQ|1|01|A|1597
5UYQ|1|01|A|1598
5UYQ|1|01|U|1599
5UYQ|1|01|C|1600
5UYQ|1|01|G|1601
5UYQ|1|01|U|1602
5UYQ|1|01|A|1603
5UYQ|1|01|C|1604

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L23

Chain 32

50S ribosomal protein L34