J4_5UYQ_013

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

5UYQ|1|A|C|576, 5UYQ|1|A|A|815, 5UYQ|1|A|C|817, 5UYQ|1|A|G|818, 5UYQ|1|A|A|819, 5UYQ|1|A|U|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UYQ_013 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.0977

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

5UYQ|1|A|G|575
5UYQ|1|A|C|576
5UYQ|1|A|G|577
*
5UYQ|1|A|C|764
5UYQ|1|A|G|765
5UYQ|1|A|A|766
5UYQ|1|A|A|767
5UYQ|1|A|A|768
5UYQ|1|A|G|769
*
5UYQ|1|A|C|810
5UYQ|1|A|C|811
5UYQ|1|A|G|812
5UYQ|1|A|U|813
5UYQ|1|A|A|814
5UYQ|1|A|A|815
5UYQ|1|A|A|816
5UYQ|1|A|C|817
5UYQ|1|A|G|818
5UYQ|1|A|A|819
5UYQ|1|A|U|820
5UYQ|1|A|G|821
*
5UYQ|1|A|C|879
5UYQ|1|A|C|880

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 01

Large subunit ribosomal RNA; LSU rRNA

Chain H

30S ribosomal protein S8

Chain K

30S ribosomal protein S11

Chain L

30S ribosomal protein S12

Chain O

30S ribosomal protein S15

Chain Q

30S ribosomal protein S17

Chain U

30S ribosomal protein S21