J4_5UYQ_016

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAG*CAG*UUGGUCG*CA

Length

16 nucleotides

Bulged bases

5UYQ|1|Y|U|8, 5UYQ|1|Y|U|47, 5UYQ|1|Y|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UYQ_016 not in the Motif Atlas

Homologous match to J4_3TUP_001

Geometric discrepancy: 0.3809

The information below is about J4_3TUP_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5UYQ|1|Y|U|7
5UYQ|1|Y|U|8
5UYQ|1|Y|A|9
5UYQ|1|Y|G|10
*
5UYQ|1|Y|C|25
5UYQ|1|Y|A|26
5UYQ|1|Y|G|27
*
5UYQ|1|Y|U|43
5UYQ|1|Y|U|44
5UYQ|1|Y|G|45
5UYQ|1|Y|G|46
5UYQ|1|Y|U|47
5UYQ|1|Y|C|48
5UYQ|1|Y|G|49
*
5UYQ|1|Y|C|65
5UYQ|1|Y|A|66

Current chains

Chain Y

tRNALys

Nearby chains

Chain 01

Large subunit ribosomal RNA; LSU rRNA

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain L

30S ribosomal protein S12

Chain Z

Elongation factor Tu 2