J4_5V8I_016
3D structure
- PDB id
- 5V8I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S ribosome lacking ribosomal protein uS17
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CGAAG*CGCC*GAG*CGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5V8I_016 not in the Motif Atlas
- Homologous match to J4_9DFE_002
- Geometric discrepancy: 0.0864
- The information below is about J4_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5V8I|1|2A|C|297
5V8I|1|2A|G|298
5V8I|1|2A|A|299
5V8I|1|2A|A|300
5V8I|1|2A|G|301
*
5V8I|1|2A|C|316
5V8I|1|2A|G|317
5V8I|1|2A|C|318
5V8I|1|2A|C|319
*
5V8I|1|2A|G|323
5V8I|1|2A|A|324
5V8I|1|2A|G|325
*
5V8I|1|2A|C|337
5V8I|1|2A|G|338
5V8I|1|2A|U|339
5V8I|1|2A|A|340
5V8I|1|2A|G|341
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 2F
- 50S ribosomal protein L4
- Chain 2Y
- 50S ribosomal protein L24
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