J4_5V93_004

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGUUC*GGUGAG*CCC*GGCCCGUAC

Length

23 nucleotides

Bulged bases

5V93|1|A|G|1472

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V93|1|A|G|1441
5V93|1|A|G|1442
5V93|1|A|U|1443
5V93|1|A|U|1444
5V93|1|A|C|1445
*
5V93|1|A|G|1469
5V93|1|A|G|1470
5V93|1|A|U|1471
5V93|1|A|G|1472
5V93|1|A|A|1473
5V93|1|A|G|1474
*
5V93|1|A|C|1535
5V93|1|A|C|1536
5V93|1|A|C|1537
*
5V93|1|A|G|1831
5V93|1|A|G|1832
5V93|1|A|C|1833
5V93|1|A|C|1834
5V93|1|A|C|1835
5V93|1|A|G|1836
5V93|1|A|U|1837
5V93|1|A|A|1838
5V93|1|A|C|1839

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23