J4_5V93_006

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAGCGACUG*CACAG*UGAC*GUAACGACUUC

Length

30 nucleotides

Bulged bases

5V93|1|A|A|2219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V93|1|A|G|2001
5V93|1|A|G|2002
5V93|1|A|A|2003
5V93|1|A|G|2004
5V93|1|A|C|2005
5V93|1|A|G|2006
5V93|1|A|A|2007
5V93|1|A|C|2008
5V93|1|A|U|2009
5V93|1|A|G|2010
*
5V93|1|A|C|2022
5V93|1|A|A|2023
5V93|1|A|C|2024
5V93|1|A|A|2025
5V93|1|A|G|2026
*
5V93|1|A|U|2061
5V93|1|A|G|2062
5V93|1|A|A|2063
5V93|1|A|C|2064
*
5V93|1|A|G|2213
5V93|1|A|U|2214
5V93|1|A|A|2215
5V93|1|A|A|2216
5V93|1|A|C|2217
5V93|1|A|G|2218
5V93|1|A|A|2219
5V93|1|A|C|2220
5V93|1|A|U|2221
5V93|1|A|U|2222
5V93|1|A|C|2223

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain x

Mitochondrial domain of uncharacterised function (DUF1713)