J4_5V93_007

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5V93|1|A|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5V93_007 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1492

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

5V93|1|A|C|2067
5V93|1|A|U|2068
5V93|1|A|G|2069
*
5V93|1|A|C|2143
5V93|1|A|G|2144
*
5V93|1|A|C|2162
5V93|1|A|C|2163
5V93|1|A|U|2164
5V93|1|A|A|2165
5V93|1|A|A|2166
5V93|1|A|G|2167
5V93|1|A|G|2168
5V93|1|A|U|2169
5V93|1|A|A|2170
5V93|1|A|G|2171
*
5V93|1|A|C|2205
5V93|1|A|G|2206
5V93|1|A|A|2207
5V93|1|A|A|2208
5V93|1|A|U|2209
5V93|1|A|G|2210

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain x

Mitochondrial domain of uncharacterised function (DUF1713)