J4_5V93_010

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V93|1|a|G|110
5V93|1|a|A|111
5V93|1|a|G|112
5V93|1|a|U|113
5V93|1|a|A|114
5V93|1|a|A|115
5V93|1|a|C|116
5V93|1|a|A|117
5V93|1|a|C|118
*
5V93|1|a|G|237
5V93|1|a|G|238
5V93|1|a|C|239
*
5V93|1|a|G|285
5V93|1|a|U|286
5V93|1|a|A|287
5V93|1|a|G|288
*
5V93|1|a|C|310
5V93|1|a|C|311

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17