J4_5V93_012
3D structure
- PDB id
- 5V93 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GAG*CGAAAG*CCGUAAACGGUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 5V93|1|a|A|567, 5V93|1|a|G|809, 5V93|1|a|U|811
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5V93_012 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.1621
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5V93|1|a|G|566
5V93|1|a|A|567
5V93|1|a|G|568
*
5V93|1|a|C|755
5V93|1|a|G|756
5V93|1|a|A|757
5V93|1|a|A|758
5V93|1|a|A|759
5V93|1|a|G|760
*
5V93|1|a|C|801
5V93|1|a|C|802
5V93|1|a|G|803
5V93|1|a|U|804
5V93|1|a|A|805
5V93|1|a|A|806
5V93|1|a|A|807
5V93|1|a|C|808
5V93|1|a|G|809
5V93|1|a|G|810
5V93|1|a|U|811
5V93|1|a|G|812
*
5V93|1|a|C|872
5V93|1|a|C|873
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain h
- 30S ribosomal protein S8
- Chain l
- 30S ribosomal protein S12
- Chain o
- 30S ribosomal protein S15
- Chain q
- 30S ribosomal protein S17
- Chain x
- Mitochondrial domain of uncharacterised function (DUF1713)
Coloring options: