J4_5V93_016

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUCG*CGGAUAGGAC*GUGGAAAG*CG

Length

24 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V93|1|a|U|139
5V93|1|a|U|140
5V93|1|a|C|141
5V93|1|a|G|142
*
5V93|1|a|C|172
5V93|1|a|G|173
5V93|1|a|G|174
5V93|1|a|A|175
5V93|1|a|U|176
5V93|1|a|A|177
5V93|1|a|G|178
5V93|1|a|G|179
5V93|1|a|A|180
5V93|1|a|C|181
*
5V93|1|a|G|202
5V93|1|a|U|203
5V93|1|a|G|204
5V93|1|a|G|205
5V93|1|a|A|206
5V93|1|a|A|207
5V93|1|a|A|208
5V93|1|a|G|209
*
5V93|1|a|C|218
5V93|1|a|G|219

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20