J4_5VPO_005

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5VPO_005 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0764

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5VPO|1|RA|C|297
5VPO|1|RA|G|298
5VPO|1|RA|A|299
5VPO|1|RA|A|300
5VPO|1|RA|G|301
*
5VPO|1|RA|C|316
5VPO|1|RA|G|317
5VPO|1|RA|C|318
5VPO|1|RA|C|319
*
5VPO|1|RA|G|323
5VPO|1|RA|A|324
5VPO|1|RA|G|325
*
5VPO|1|RA|C|337
5VPO|1|RA|G|338
5VPO|1|RA|U|339
5VPO|1|RA|A|340
5VPO|1|RA|G|341

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24