J4_5VPP_007

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

5VPP|1|RA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5VPP_007 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.098

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5VPP|1|RA|G|1310
5VPP|1|RA|G|1311
5VPP|1|RA|U|1312
5VPP|1|RA|U|1313
5VPP|1|RA|C|1314
*
5VPP|1|RA|G|1338
5VPP|1|RA|G|1339
5VPP|1|RA|U|1340
5VPP|1|RA|U|1341
5VPP|1|RA|A|1342
5VPP|1|RA|G|1343
*
5VPP|1|RA|C|1404
5VPP|1|RA|U|1405
*
5VPP|1|RA|A|1597
5VPP|1|RA|C|1598
5VPP|1|RA|C|1599
5VPP|1|RA|C|1600
5VPP|1|RA|G|1601
5VPP|1|RA|U|1602
5VPP|1|RA|A|1603
5VPP|1|RA|C|1604

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23