J4_5VPP_011

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

5VPP|1|RA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5VPP_011 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1774

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5VPP|1|RA|U|1833
5VPP|1|RA|U|1834
5VPP|1|RA|G|1835
*
5VPP|1|RA|C|1905
5VPP|1|RA|G|1906
*
5VPP|1|RA|C|1924
5VPP|1|RA|C|1925
5VPP|1|RA|U|1926
5VPP|1|RA|A|1927
5VPP|1|RA|A|1928
5VPP|1|RA|G|1929
5VPP|1|RA|G|1930
5VPP|1|RA|U|1931
5VPP|1|RA|A|1932
5VPP|1|RA|G|1933
*
5VPP|1|RA|C|1967
5VPP|1|RA|G|1968
5VPP|1|RA|A|1969
5VPP|1|RA|A|1970
5VPP|1|RA|A|1971
5VPP|1|RA|A|1972

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2