J4_5W4K_002

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5W4K_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0556

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5W4K|1|1A|C|321
5W4K|1|1A|G|322
5W4K|1|1A|A|323
5W4K|1|1A|A|324
5W4K|1|1A|G|325
*
5W4K|1|1A|C|340
5W4K|1|1A|G|341
5W4K|1|1A|C|342
5W4K|1|1A|C|343
*
5W4K|1|1A|G|347
5W4K|1|1A|A|348
5W4K|1|1A|G|349
*
5W4K|1|1A|C|361
5W4K|1|1A|G|362
5W4K|1|1A|U|363
5W4K|1|1A|A|364
5W4K|1|1A|G|365

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24