J4_5W4K_024

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

5W4K|1|2A|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5W4K_024 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0581

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

5W4K|1|2A|U|1833
5W4K|1|2A|U|1834
5W4K|1|2A|G|1835
*
5W4K|1|2A|C|1905
5W4K|1|2A|G|1906
*
5W4K|1|2A|C|1924
5W4K|1|2A|C|1925
5W4K|1|2A|U|1926
5W4K|1|2A|A|1927
5W4K|1|2A|A|1928
5W4K|1|2A|G|1929
5W4K|1|2A|G|1930
5W4K|1|2A|U|1931
5W4K|1|2A|A|1932
5W4K|1|2A|G|1933
*
5W4K|1|2A|C|1967
5W4K|1|2A|G|1968
5W4K|1|2A|A|1969
5W4K|1|2A|A|1970
5W4K|1|2A|A|1971
5W4K|1|2A|A|1972

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2x

Transfer RNA; tRNA