J4_5WE4_014
3D structure
- PDB id
- 5WE4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome-EF-Tu wt complex with GppNHp
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 5WE4|1|v|4SU|7, 5WE4|1|v|U|47, 5WE4|1|v|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5WE4_014 not in the Motif Atlas
- Homologous match to J4_9DFC_015
- Geometric discrepancy: 0.1327
- The information below is about J4_9DFC_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
5WE4|1|v|G|6
5WE4|1|v|4SU|7
5WE4|1|v|G|8
5WE4|1|v|G|9
*
5WE4|1|v|C|25
5WE4|1|v|G|26
5WE4|1|v|U|27
*
5WE4|1|v|A|43
5WE4|1|v|A|44
5WE4|1|v|G|45
5WE4|1|v|A|46
5WE4|1|v|U|47
5WE4|1|v|C|48
5WE4|1|v|G|49
*
5WE4|1|v|C|65
5WE4|1|v|C|66
Current chains
- Chain v
- tRNA-fMet
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- 30S ribosomal protein S13
Coloring options: